makeblastdb using specific taxIDs
sorry if this is an amateur question. how can you use the makeblastdb command to create a local database that contains only genome sequences from a specific set of taxIDs? Any helpful information much appreciated.
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jgl4 •
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You will need to create a fasta file of the sequences for that taxID. For that see the original post in: Extract all bacteria sequences from the nr database Replace
9606inawkcommand with taxID of your interest.Follow that up by: A: How to make a custom blast db with taxon IDs from a taxid_map file