Bioinformatics And Parallel Programming (Gpu)

Question

[Dana]

I want to use Cuda to solve some bioinformatics problems (i am a CS student). i am mostly interested in graph algorithms. What problems do you think are the most important, are unsolved yet, or have not been implemented on GPUs?

Answer 1

[Istvan Albert]

The question Bioinformatics and Graph Algorithms lists a number of important graph algorithms, and frankly most of them don't have easily accessible solutions with GPU based implementations.

Answer 2

[Biostar User]

Here is the link for a recently published GPU-MSA: http://gpualign.cs.put.poznan.pl/