I was not able to fix this issue, but her is another thread maybe informative
tool to compare sv between two files
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I am using vcf command like this: (note: vcf file contains structure variations only)
vcf-compare -p a.vcf.gz b.vcf.gz
both files are processed as follow:
vcf-sort -> bgzip -> tabix
I got this error
Use of uninitialized value $out in print at /usr/local/bin/vcf-compare line 858.
plot , '-' using 1:2 axes x1y2 with lines lt 0 title "GTs total"
^
any idea?
Same problem, any solution yet...
I was not able to fix this issue, but her is another thread maybe informative
tool to compare sv between two files
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