Samtools flagstat unpaired reads
Trying to quickly remove reads samtools flagstat deems as unpaired from BAM file? Thanks.
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Pierre Lindenbaum
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rbronste
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rbronste
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remove unpaired files = reads that are not part of a paired-end experiment ?
samtools view -f 1 -b -o out.bam in.bam
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Have you searched Biostars (use external google search) for past threads? There has to be something available already.