Difference of CN probes and SNP probes on genotyping microchip arrays
Is there a difference between copy number (CN) probes compared to SNP probes on SNP arrays such as the Affymetrix 6.0 SNP array? Physically there could be longer oligos for the CN probes? Do you have to analyse both probes differently, e.g. do tools such as PennCNV use both probes for CNV detection?
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
What is the best pipeline to analyze affymetrix snp 6.0 array in 2020?
written by donny.dw •
-
Clear deletion in arrays - no signal in NGS
written by German.M.Demidov
-
Can SNP array handle clustered SNPs
written by Chen Sun
-
Are there NGS-based CNV callers that utilise allele frequency?
written by d-cameron
-
Question about CNV analysis on tumors
written by test •
-
Some GenomeWide SNP6.0 CN probes are missing compared to affymetrix's CN annotation file.
written by agicict
-
Use Aroma Project to preprocess files for PennCNV
written by gaiusjaugustus
-
Processing With Snp6 Cel Files Into Cn Segmentations
written by J.F.Jiang
-
Snp Detection And Snp-Array, Is There A Way To Do It?
written by rantree •
-
Cnv Calling Methods For The Illumina Omni2.5 - Penncnv And Quantisnp Possible?
written by Ryan D
