Get non redundant from Bacteria Archaea Fungi
Hello, I have downloaded Non redundant protein database from NCBI. The thing is that i´m only interested in Bacteria, Archaea , Fungi . Is there a quick way to filter this file
Refseq is not suitable for me because some sequences are not yet in there.
Is there a quick way of doing this ??
Thanks,
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get NCBI taxonomy id for each downloaded protein. Assign kingdom (Bacteria, Archea , Plant, Fungi , Matazoa etc) using taxonomy id. (Follow this thread to map kingdom information to taxid).