I’m simulating shotgun reads for RNA data (e.g. I have a bunch of bacterial genomes and I want to generate simulated reads). Should I use …

Hi, I'm working on some viral sequences form [Refseq][1] and wondering whether some of these complete genomes are in fact prophages. I know that this …

Do bacterial genomes in RefSeq contain annotations for prophages, and if so, where do I find them? The rationale is I don't want to have …

Is there a phylogenetic tree **with edge lengths** that encompasses all of the bacterial genomes in e.g. RefSeq or Genbank at the NCBI? Basically, an …

Hi, I am new to bioinformatics. But I have a dataset that I want to analyze. I want to build a custom BLAST database according …

I have fasta files of different genomes of bacteria taken from the NCBI RefSeq database. I want to get the annotation of these genomes as …

I want to generate simulated reads from the NCBI RefSeq using ART. As the NCBI RefSeq database is so big and have similar genomes although …

I have reads from Illumina HiSeq, paired end, 126 bp each reads (after adaptor trimming) from metagenomic samples. reads are post filtration against human genome …

I have a large metagenomic RNA-seq dataset that I am trying to assemble to find viral sequences but it is too large for my hardware …

<p>What are the most common viral DNA sequences found in human or other mammalian resequencing samples? I have seen there is an NCBI refseq viral …