esearch in reutils package: how to specify dataset?
Hello!
I have a question about the reutils package.
There is a function called esearch() which allows you to search the GEO database. So, I entered the same query that I would use in GEO: "UIDs<-esearch( term = "METHYLATION PROFILING BY ARRAY[DATASET TYPE]"), but esearch() doesn't recognize "DATASET TYPE".
So my question is, how do I specify the dataset type to esearch()?
This is my code btw: UIDs<-esearch( term = "METHYLATION PROFILING BY ARRAY[DATASET TYPE]" )
Thank you
• 1,993 views
•
link
written
by
ezrabekele17 •
1 answer
I figured out you have to set the database as "gds".
• 0 views
•
link
written
by
ezrabekele17 •
Log in to answer this question.
More posts like this
-
Expression Profiling by array in Geo Datasets (Normalization)
written by David •
-
how to search and get bisulfite-sequencing fastq files
written by parra.sev •
-
Strange esearch behavior
written by Ram
-
Exclude Replaced or Discontinued UIDs from an reutils.esearch operation
written by Ram
-
Does minfi's read.metharray() support all methylation arrays (27k, 450k, and EPIC)?
written by ezrabekele17 •
-
efetch returning gene instead of accession number - R
written by ezrabekele17 •
-
efetch result not in character format
written by ezrabekele17 •
-
NCBI: Parsing data nicely?
written by Tom •
-
How to search/filter GEO datasets according platform (Illumina/Affymetrix)
written by brain sample •
-
Rna Seq Data In Geo Datasets
written by Bioinformatics_NewComer
Cross-posted to https://stackoverflow.com/questions/44532441/esearch-in-reutils-package-how-to-specify-dataset/44533151 where I answered.