This is a test version of Biostars. For the public version, visit https://www.biostars.org.
how to use matplot when you have replicates?

Hi,

How can I use matplot() to draw the expression of genes over different conditions when each condition has replicates? Should I calculate the average of expression in each condition and then normalize my data and then scale them and draw them?

I want to draw something like this:

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4528625/figure/btv193-F5/

Thanks

matplot read counts
• 1,620 views • link
written by statfa statfa

From the Trinity RNAseq assembler, see the script $TRINITY_HOME/Analysis/DifferentialExpression/define_clusters_by_cutting_tree.pl for inspiration.

• 0 views • link
written by h.mon h.mon

Thank you so much. I will try that.

• 0 views • link
written by statfa statfa

0 answers

No answers yet.

Log in to answer this question.

More posts like this