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TCGA PRAD Data Germline BRCA1/2 status

Hi,

Does anyone know where I can get hold of Germline BRCA1/2 status of TCGA PRAD samples that has already been published? I no longer have access to the legacy VCFs (which I think may have germline information).

Thanks!

sequencing

1 answer

Solved - good news, you can still download normal tissue (blood/normal adjacent) WXS VCFs from current (not archived) repository and then annotate to obtain BRCA1/2 mutational status!

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