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Collect quality information from raw sequencing data

Hi,

I have multiple illumina WGS data and I would like to collect quality information from all samples. I know fastQC report tells the quality information by producing graphs, but I want to summarise the quality scores in number like "% Bases Q ≥ 30 = 80" since I have multiple samples.

I searched for programs which can do this, but I couldn't find. Does anyone have any idea on this? or better idea to summarise quality information of raw sequencing data?

quality check wgs fastq
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updated by shenwei356 shenwei356 • written by sai • sai

1 answer

MultiQC - Aggregate results from bioinformatics analyses across many samples into a single report

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written by shenwei356 shenwei356

Thank you for your suggestion! I will definitely try that.

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written by sai • sai

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