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Extract CDS from an extracted gene without bioperl

HI everyone

I have extracted genes from whole genome using bedtools getfasta command and now I want to get CDS of each gene by using any tool, because every script (which are given in different biostar posts) I tried have some bugs and as I'm beginner in bioinformatics I can't handle or edit those scripts properly,, I have fna and gff files of 100 genomes and I have extracted 2 genes from each and now I want to extract CDS kindly help me how to do so I have short time for this task.. :(

Edit: I have find emboss tool but it requires genbank files as input and I don't know how to extract single gene from genbank whole genome file without bioperl or python

cds
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updated by Ram Ram • written by adeena_hassan • adeena_hassan

1 answer

Now you have obtained the CDS of genes, then you just convert cDNA to RNA，

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written by Ben Ben

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