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RNA-seq power analysis

Hi there, I'm now looking for some good tools for power analysis for RNA-seq. Is there any recommended tool for the RNA-seq fastq files? Thanks!

Sincerely, Simon

rna-seq power analysis
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updated by Carlos Caicedo Carlos Caicedo • written by niu.shengyong • niu.shengyong

2 answers

This paper may help.

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written by Carlos Caicedo Carlos Caicedo

I remember a recent paper on this topic here. You won't be able to do a power calculation from fastq files, as you need more information about the test you're carrying out. You can check out the RNASeqPower package in bioconductor. Alternatively, there's the pwr package in CRAN, which is a good baseline framework of standard power calculations.

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written by andrew.j.skelton73 andrew.j.skelton73

Hi Andrew,

I'll try to use the tools you suggested. Really appreciate it !

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written by niu.shengyong • niu.shengyong

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