R square value from genotype imputation process
Hi everyone! I know this is not a bioinformatic question, but any help would be greatly apreciated!
I am currently working with imputed genotypes and I'm wondering...why lots of papers report R² >0.3 (Rsq in minimac 3 outputs) as a good imputation quality score?
I don't know, my current statistical background says that a value like that does not look very correlated to the genotyped variants whichever they are.
What do you know about it?
Thanks in advance!
• 1,903 views
•
link
0 answers
No answers yet.
Log in to answer this question.