Entering edit mode
6.9 years ago
Esther Brasil
▴
40
I am using PROKKA with the following set of arguments:
$ prokka myorganism.fa --cdsrnaolap ON --rfam 1 --rawproduct
While my gbk and gff seems okay, I obtain an error file of 1.2Mb saying that all my features have inconsistent gene locations and "DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist".
I though that maybe because my genome is new the IDs are not recognized. Is that right?
Note: This exact question was also posted on the Prokka GitHub and resolved there: https://github.com/tseemann/prokka/issues/234