HISAT2 or SALMON AND KALLISTO
What is good for RNASeq analysis, HISAT2 or Salmon and kallisto ? Please advise if other good option is available.
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ATpoint
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biks.kestro •
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biks.kestro •
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In my sub-field (environmental eukaryotes), Salmon is more popular than the other two, but as others have mentioned below all three are established and respected methods. Salmon and kallisto are extremely similar. I do not have experience with HISAT2.