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Is there any automatic way and software to return M Tuberculosis genes start and end positions with synonyms from a list of input genes at once?

Is there any automatic way and software to return M Tuberculosis genes start and end positions with synonyms from a list of input genes at once? Tuberculist can handle only single gene names. I need a .bed file with all TB resistance-responsible genes. Where can I get it ready?

tuberculosis bed genes annotation
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written by matveyspr • matveyspr

Basically a BED file for katG, inhA, rpoB, pncA, embB, rrs, gyrA, gyrB?

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written by GenoMax GenoMax

for these genes I have compiled a table manually. Can share with you:

CDS 7302 9818 + gyrA Rv0006 CDS 5240 7267 + gyrB Rv0005 RBS 759796 759800 + rpoB Rv0667 CDS 759807 763325 + rpoB Rv0667 CDS 2153889 2156111 - katG Rv1908c RBS 2156117 2156121 - katG Rv1908c CDS 575348 576790 + mshA Rv0486 CDS 2726193 2726780 + ahpC Rv2428

Need more genes, it is rather not pro and untechnical and tedious to do it manually from Tuberculist. Wish to do it automatically based on gene name input. That is an idea for implementation.

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written by matveyspr • matveyspr

Hello matveyspr!

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Not a real question

For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with.

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written by Michael Dondrup Michael Dondrup

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