Hi, I'm trying to do a meta-analysis of 4 studies (microarrays and RNA-seq). I'm using the rma function from the **metafor** package, with the DerSimonian-Laird …
I just have FPKM RNA-seq gene expression data, I would like to ask which software or R-package can use fpkm data to identify differentially expressed …
Hi everyone, I have met a problem with RNA-seq analysis. My data: 4 experimental conditions with each of 3 biological replicates, total 12 samples. When …
Dear group, I have RNA-Seq data and I use cuffdiff. Everytime I run cuffdiff, the gene_exp.diff gets the list of differentially expressed genes. However the …
Experimental background: Mice underwent three drug treatment conditions, with three biological replicates per condition. 100 bp paired-end RNA-seq was carried out on a specific brain …
Hi all, I am looking for a method to compare the significance of the expression difference of two different transcripts within a specific condition. with …
<p>Hi,</p> <p>I am working with cufflinks,cuffdiff for RNA-SEQ data. </p> <p>In cufflinks, If we are not looking for novel isoforms, we need to use GTF …