how not to enforce FDR cutoff on cuffdiff result
Dear group,
I have RNA-Seq data and I use cuffdiff. Everytime I run cuffdiff, the gene_exp.diff gets the list of differentially expressed genes. However the cutoff is applied 5% FDR. I want to be able to enforce no cutoff of FDR. How could I do that in cuffdiff command. Appreciate any input by members.
Thank you.
Adrian
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