Mutation calling rules in TCGA

Dear group members

What are the rules to call a mutation/variation in exome or targeted sequencing pipelines of TCGA or any other project. Is there a place I can read those? I am looking to rules such as what are the QD cutoff, QUAL cutoff, read depth cutoffs etc.

Thanks Adrian

variant calling

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written 9.5 years ago by oriolebaltimore

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