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SNP coordinate conversion

I am interested in converting the coordinates of SNP relative to their gene into a coordinate relative to the chromosome. For example; I have a SNP

BRCA1 c.4327C>T

I want to coordinates in the following form instead

chr9:14801712

the reason is that litterature often uses the first convention and the cosmic database uses the second. Any tools for this task? Thanks!

snp gene coordiantes

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