To know the breast cancer subtypes and molecular types from TCGA data
Hello,
I'm using the TCGA data related to Breast invasive carcinoma (BRCA).
I downloaded the clinical data that contains the clinical feature of each patient from TCGA.
My problem is that I can't find the subtypes of breast cancer and their molecular subtypes also. For example Luminal A, Luminal B, HER2+ve and Basal are the breast cancer subtypes and ER, PR, HER2 are their molecular subtypes.
Where can I find the subtypes information of BRCA for TCGA data? Does it exist at all? Please help me in this regard.
Thanks Ashmita
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There are perhaps other ways of looking at this. Scrolls in the tables over to right to see info you want.
http://www.cbioportal.org/study?id=brca_sanger#clinical
http://www.cbioportal.org/study?id=brca_tcga_pub#clinical
http://www.cbioportal.org/study?id=brca_tcga_pub2015#clinical
Hi,
Were you able to find the subtype of the Breast Cancer from the data provided in the GDC portal?
Thanks, RP