Best de novo genome assemblies using only Illumina data ??
Hi,
I am looking for papers of the best de novo assemblies ever done with (and only) Illumina data for differents kind of organisms (bacteria, insect, mammals, plants etc.)
By best I mean accurate, not fragmented (high N50), no contaminations, good completeness scores etc.
Do you know any ?
Thanks for your help.
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It depends of the genome complexity and sequencer`s performance, not only of assemblers. I have used and compared SPADES and IDBA for small genomes (about 50 Mb) and I think they works fine.
Maybe I was not clear with my question.
I am not asking which assembler is the best, but I am looking just for papers with different project that have done a de novo genome assembly and had good results.
(like the panda genome)
http://www.nature.com/nature/journal/v463/n7279/full/nature08696.html
Please rephrase the post title to reflect more of what you're looking for.