Depleting BED file of specific regions

Hi,

Wondering about the best/easiest way to deplete a BED file of regions that are promoter proximal - or any other specific genomic "region"? Thanks

Rob.

sequencing chip-seq

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updated 9.4 years ago by Pierre Lindenbaum

• written 9.4 years ago by rbronste

1 answer

bedtools intersect http://bedtools.readthedocs.io/en/latest/content/tools/intersect.html

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written 9.4 years ago by Pierre Lindenbaum

So you would just use the intersect of BED file of promoter distal regions for lets say mm10? Thanks.

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written 9.4 years ago by rbronste

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