Correcting batch effect from known variables in RnBeads using Combat
Dear all,
Do you know how to correct batch effect from known variables in RnBeads using Combat. There is no options to change the interface method from sva to combat in ?rnb.options.
many thanks in advance, Rahel
• 2,453 views
•
link
updated
by
Ram
•
written
by
rahel14350 •
•
written
by
rahel14350 •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Batch effect for SNP array
written by Taylor95 •
-
KNIME workflow for data mining of protein expression data from TCGA
written by rahel14350 •
-
missing values for beta values in Rnbeads (imputation of NAs)
written by rahel14350 •
-
RRBS data analysis using RnBeads give Scan() error
written by rahel14350 •
-
SVA : Setting up the data from an ExpressionSet and applying sva function to extimate batches
written by lessismore
-
categorize DMRs by type (hyper - hypo methilated) in DMRcate or minfi
written by rahel14350 •
-
how to do noob+funnorm+bmiq normalization together in minfi or RnBeads?
written by rahel14350 •
-
Percentages of samples mutated in individual tumour
written by rahel14350 •
-
converting to MAF or clustal format
written by rahel14350 •
-
removing batch effects using ComBat and SVA
written by LJ
