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Does MACS2 or MACS14 perform total reads normalization?

Does MACS2 or MACS14 perform total reads normalization?

I didn't see them to discuss about it. Just want to make sure the default parameters doesn't do the total reads normalization.

Thanks,

chip-seq

The chip and control reads are scaled to same sequencing depth ( towards lower ) before doing a poisson test for signal enrichment.

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