How to designate a sample's subtype based on microarray model without microarray but RNAseq
Hello.
I am studying glioblastoma (GBM) and its four subtypes were established based on microarray data (TCGA 2010).
I have only RNA-seq data without microarray and want to know subtypes of my samples individually.
As far as I know, there is no paper where authors predict GBM's four subtypes based on RNA-seq data.
I would like to know any method or paper which can solve my issue.
Thank you.
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Maybe you can start with/use principal components analysis?
How did the array paper do it?