Thank you for answering my question!
• 0 views
•
link
written
by
Charles Yin
How to retrieve DNA sequence from GI number using Biopython?
I try to use Biothon to retrieve DNA sequence, the following code can get DAN sequence by a GenBank access number, but cannot get sequence from a GI number, can someone help me? Thank you!
accessId='U09422'
handle = Entrez.efetch(db='nuccore', rettype="gb", id=accessId,retmode="text")
• 2,296 views
•
link
updated
by
WouterDeCoster
•
written
by
Charles Yin
•
written
by
Charles Yin
1 answer
NCBI no longer uses GI numbers. You will have to use accession numbers.
Log in to answer this question.
More posts like this
-
Can't get accession number using Entrez.
written by charlieclark1ee •
-
Seqrecord object to only a single line sequence (without ID)
written by voltosj •
-
downloading full genbank file using Entrez efetch
written by seok1213neo •
-
Getting DNA sequence from a genome knowing the start and end position
written by PaSua •
-
How to get all transcript and CDS from gene_id in biopython?
written by ishenweiyan •
-
Retrieve title name by accession R vs Python
written by Medhat
-
Bio.Entrez.efetch return all annotated features
written by kksaw •
-
Entrez.efetch HTTP Error 400: Bad request
written by wanderingstefan •
-
Jupyter python cell will not finish to completion how to fix hash(id(seq) issue
written by bcheda •
-
Obtaining sequence from Bioproject IDs using biopython gives unknown sequence
written by Prasad •
