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Encode RNA-seq expression matrix

Hi,

I'm looking for an Encode RNA-seq expression matrix. I could download all the bam files and run htseq-count but I wonder if there's an easier way.

I found these on the Encode site however they are based on GRCh38 and I'm looking for hg19 data. Also, the download speed for this file is going at ~40 Kbps.

Thanks if anyone has any pointers

rna-seq encode
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updated by Zhilong Jia Zhilong Jia • written by floris.barthel • floris.barthel

1 answer

It seems there are options for hg19 in the File section. See figure enter image description here .

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written by Zhilong Jia Zhilong Jia

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