How to fix FreeBayes error "unable to find FASTA index entry"

How to fix FreeBayes error: Fatal error: Exit code 1 () unable to find FASTA index entry for 'CP003248.2'

freebayes galaxy

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updated 9.4 years ago by shenwei356

• written 9.4 years ago by genome21 •

1 answer

According to the error message, you may recreate FASTA index file.

e.g., using samtools: samtools index seqs.fasta, using seqkit: seqkit faidx seqs.fasta.

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written 9.4 years ago by shenwei356

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