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Forum: Genetic distances Vs Physical positions

Dear All,

I have constructed the SNP based genetic map. I would like to perform collinearity analysis using Genetic distances Vs Physical positions. How do I derive physical position using genome assembly? How do I generate Marey plot?

Secondly, I am also looking for method to estimate recombination rate for each chromosome and generate a plot for each chromosome.

Finally, how can I align linkage map with genome assembly?

Could you please guide me?

Thanks,
YP

next-gen assembly snp r
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updated by Ram Ram • written by myprogramming2016 • myprogramming2016

This is a very open-ended question, akin to "please, someone do my project for me". Biostars is more for specific questions where the asker gives a clear idea of what he wants to do. If you have any specific questions, I encourage you to ask them. But I'm closing this thread.

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written by Brian Bushnell Brian Bushnell

Hello myprogramming2016!

We believe that this post does not fit the main topic of this site.

Too vague

For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with.

If you disagree please tell us why in a reply below, we'll be happy to talk about it.

Cheers!

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written by Brian Bushnell Brian Bushnell

Hi Brian, Sorry, if you think that I asked someone do my project. I have seen many posts asking this kind of questions and they have been replied. I am trying to find a way do the analysis, but unable to find it.
Okay. I am deleting my post.

Sorry again! Thanks

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written by myprogramming2016 • myprogramming2016

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