This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Paper enrichment based on gene list

About a year ago I stumbled upon a website that allowed one to supply a query list of gene names, and it would return papers that were enriched for those gene names.

It may or may not have also worked with keywords.

I'm having a lot of trouble finding it and was wondering if anyone could point me to it?

Thanks!

gene

This paper sounds like what you are describing but the site does not appear to be working.

1 answer

What you're looking for sounds a bit like what Caipirini does (paper). It ranks papers based on the relevance to the input gene list.

Not exactly what you're looking for but also maybe of interest is Martini ([paper][4). It compares two gene lists using keywords from PubMed abstracts.

Log in to answer this question.