Marker file for GISTIC 2 as CN data called by VarScan2
Hi all,
I'd like to find the recurrent SCNAs across a set of tumor samples using GISTIC 2. Segment file and marker file are required to run GISTIC 2. As my segment file is generated by VarScan 2 using exome sequencing data, I don't know how to generate the corresponding marker file.
Could someone tell me how to generate the marker file for GISTIC 2?
Thank you very much.
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Feng Xie •
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