More posts like this
-
Read1 and read2 asymmetry in stranded, paired-end rnaseq data aligned by STAR
written by yampolsk •
-
Strand-specific quantification of RNA-seq data without strand-aware mapping
written by tdsone •
-
Distinguish between forward strand, plus strand, sense strand
written by tien •
-
How to get information about antisense/sense lncRNAs?
written by newbie
-
Is first strand the sense or the antisense?
written by Jay-Run •
-
Antisense transcription from strand specific RNA-seq
written by sorrymouse
-
Strand-option in hisat2
written by vm.higareda •
-
How stranded is stranded RNA-Seq (TruSeq) protocol?
written by Leszek
-
Identifying antisense transcript with stranded RNA-seq.
written by a.kmg •
-
Who/What Determines The Sense And Antisense Strand
written by John
As far as I know those colours can be adjusted by the users, but I think the default for white/light grey is mapping quality of 0. You could check this easily by checking the mapping quality of the white reads...