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Getting PFAM database

Hi,

I am trying to run PFAM locally. I need to download some databases from the website: ftp://ftp.ebi.ac.uk/pub/databases/Pfam/current_release/ But there are too many files and I am not so sure which to download. All I want to do is to get the multi-domain architecture of my fungal protein sequences. Does anyone have any idea which databases I would need to download?

Thanks in advance!

sequence

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updated 9.5 years ago by cschu181

• written 9.5 years ago by s.kyungyong64 •

1 answer

Assuming you want to run hmmer on it: ftp://ftp.ebi.ac.uk/pub/databases/Pfam/current_release/Pfam-A.hmm.gz.

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written 9.5 years ago by cschu181

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