Entering edit mode
7.1 years ago
j.j.stocks
•
0
Hi, I have the following situation for a SNP:
In the BIM file Contig position A1 A2 3551 58921 C T
Reference is T
In the SNPmatrix it gets coded as 3 when T/T and 1 when C/C, 2 T/C.
Given the reference is T and for individuals that are T/T shouldn't it be coded 1?
Many thanks