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Any tools to detect lncRNAs from RNA-seq data?

Hi,

I have a set of RNA-seq data, extracted from different conditions plus the genome, the transcriptome and the genome annotation. I would like to detect lncRNA from RNA-seq data. Any tool available for this?

rna-seq
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updated by EagleEye EagleEye • written by arash.iranzadeh1980 • arash.iranzadeh1980

If you already have annotations for lncRNA then just calculate its expression by using RSEM

If not then you'd have to run Cufflinks as RABT assembly

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written by Manvendra Singh Manvendra Singh

1 answer

Try this pipeline.

A: Any One please provide protocol for Analysing long noncoding RNA illumina NGS da

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written by EagleEye EagleEye

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