Hi, I am looking for software for protein-ligand docking. I am aware of AutoDock, VINA, HADDOCK. Which one do you suggest for virtual screening? (any …
how to save pdb file from autodock vina docking result I am visualizing autodock vina results using PyMOL: I open out.pdbqt (containing 9 docked conformations …
Is it possible to perform RNA-ligand docking using Autodock Vina? Can "prepare_receptor4.py" be used to prepare RNA receptors? (I mean, "really" used, like "with reliable …
Is **energy minimization** of a ligand and a protein compulsory before performing in silico protein-ligand docking? (I use AutoDock Vina for docking) If yes, Why …
It's necessary to minimize energy for protein before docking (docking with autodock vina), and what to use for this, what software to use, I download …