DMAP for RRBS generate blank output
Hello everyone! Lately I've been using DMAP to analyse my RRBS. Trimming(trim_galore), mapping(bismark) all seem fine. DMAP works well with test data supplied by DMAP. However when I use my raw bam generated by bismark, DMAP doesn't generate any output and there is no error message.I don't know what happened. Then I tried to sort or bam->sam conversion,it's still the same. I totally followed the prosedure supplied by author.
Thanks for any help!
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iraia.munoa
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hxlei613
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Hi! Did you find the pipeline to follow for the DMAP tool? I am in the same situation as you, when trying to use it. Did you finally find any other tool easy to use? Thanks!!