duplicate gene ids after running toxedo protocol
Hello All I am runnig tuxedo protocol for my human samples after running the cufflink i am getting the duplicate value of gene id and with different fpkms for example
gene id fpkm_control1 fpkm_control2 fpkm_test1 fpkm_test2
abc 0.88 0.65 0.56 0.1
abc 1 0 0 1
I am not able to understand why this duplicate value are coming in my analysis that too with different fpkm values. please help Thanks
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Did you check if they are two isoforms of the same gene?
They are not isoforms