5 column MACS .bed file into a BigBed
Hi, I am trying to convert my 5 column .bed file into a BigBed for loading to UCSC using -
bedToBigBed -type=bed3+2 -tab in.bed chrom.sizes out.bb
My bed file is generated using MACS peak caller so it is of the format - chr start stop MACS_ID MACS_score
The error I am getting is -
pass1 - making usageList (6 chroms): 1 millis
pass2 - checking and writing primary data (127 records, 5 fields): 2 millis
index write: 0 millis
pass3 - writeReducedOnceReturnReducedTwice: 0 millis
further reductions: 1 millis
Has anyone else faced the same issue? Please let me know, thank you.
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is it an error or just a log/message ??
Good point, it is definitely in my job.err file but looks like I have an output file made though. Maybe it did work! I will test it out on ucsc. Sorry, my bad..
Hello varsha619!
It looks like you resolved this on your own/realized there was no actual error message.
For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with.
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Cheers!