Entering edit mode
7.2 years ago
caritogandini
▴
40
Hi! I am analyzing bam files with more than 300,000 reads per site... But the maximum depth that the bam-readcount output reports is 8000. I saw a post from 2013 where the same problem was fixed. But i think the patch is not working in new versions.
This has been a known bug since at least 2015. The only current fix is to specify a region. Alternatively, fix the actual source code.
how i fix the actual source code?
You'd need to find where this is implemented and change it.