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NCBI : Obtain "gene symbol" and fasta sequence from locus_tag list

Hi,

i have a list of locus_tag such as CGI_10028029 and i would like to obtain gene and fasta sequence for each locus_tag. i don't know how to do it automatically.

Thanks

ncbi locus_tag gene symbol
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updated by Sej Modha 528 • | written by fanny.marquer 0

1 answer

You can use NCBI unix e-utils.

esearch -db gene -query "CGI_10028029"|elink -target nuccore|efetch -format fasta
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written by Sej Modha 528

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