Error from running Abyss on local Galaxy
Hi there, I am trying to assemble the reads using Abyss on local Galaxy. I used .fastq file and followed the default option for paired-end. Just a moment after submitted, I got the errors:
Fatal error: Exit code 127 () /home/computer/NGS/galaxy/database/jobs_directory/000/4/tool_script.sh: line 9: ABYSS: command not found /home/computer/NGS/galaxy/database/jobs_directory/000/4/tool_script.sh: line 9: abyss-pe: command not found
Were there something wrong with the installation or setting? Please help. Thank you very much .
• 1,701 views
•
link
written
by
artteristic •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
local galaxy Trackster can't find bedtools
written by j.matt.franklin •
-
Galaxy - bigWigToBedGraph: command not found
written by robbenstijn •
-
FastUniq ./Makefile gcc error
written by SheRa •
-
install galaxy, error /home/qi/software/galaxy/client/node_modules/phantomjs-prebuilt: Command fail…
written by qizhengyang17 •
-
error running BUSCO in Galaxy
written by kml •
-
SNPEff error on Galaxy cloud deployed instance, how to fix?
written by genome21 •
-
unable to upload bam files to my local galaxy instance - SAMtools not found
written by kvoutet •
-
TopHat producing empty files
written by matthew.ford •
-
Tools error on local galaxy
written by anjyou.80 •
-
BLASTp in python (solved)
written by albert.castella.teruel •
Looks like ABYSS is not correctly installed on your local machine under galaxy. Are you the admin or someone else? Did you install it from the toolshade?
You may want to post this over at galaxy biostars site.