Affymetrix SNP Array 5.0 - how do I transform to ATGC and coordinates?
Sorry if this has been posted before and/or if it's a ridiculous question.
I have access to only the BRIMM-p genotype calls for a set of human samples from a collaborator and this file is the format:
probe_id A-100 A-1 A-2 A-4 A-3 A-5 A-6 A-11 A-12 A-13 A-14 A-15 A-16 A-17
SNP_A-1780520 1 -1 2 2 2 2 2 2 2 0 2 2 2 2 2 2 2
etc
How can I transform this into actual dna calls (AA AT AC etc)? And the SNP id into coordinates? Surely there must be a script somewhere that I can't find!
thank you in advance!
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zelia.worman •
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