Hello there, I came across this very useful and interesting tool. I have a dataset corresponding to a paired tumor-normal data set for NGS data obtained using the 409 gene panel of Ion Proton. My questions are

1) Does this tool work with Ion Torrent data?

2) Are there any particular caveats to trying this out with Ion data as opposed to the extensive testing on Illumina data that has already been done (The bane of my existence!)

Thanks for the same!