Cycling detection in ATAC-seq data

Does anyone have a good workflow for detecting cycling peaks in ATAC/CHIP-seq data? I'm relatively new to the analysis of ATAC data, but it was suggested to me to use Metacycle and I was wondering others thoughts.

Thanks!

atac-seq cycling metacycle

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updated 9.6 years ago by Czh3

• written 9.6 years ago by ccag •

1 answer

You can read this paper (http://www.nature.com/nature/journal/v534/n7609/full/nature18606.html), the methods are talking about how to call peaks.

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updated 9.1 years ago by h.mon

• written 9.6 years ago by Czh3

That link is broken....could we get the title please?

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written 9.5 years ago by BioinfGuru

Remove the ) at the end of the link. Anyway, title is "The landscape of accessible chromatin in mammalian preimplantation embryos", Wu et al.

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written 9.2 years ago by ATpoint

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