Multiple samples for one assembly with spade
Hello there,
I am trying to do an assembly with multiple samples using the spade software. The samples are paired-end reads and I will just like to get one scaffold from these samples. Will appreciate any feedback on how I can do so!
Thank You.
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tans0307 •
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Reference link for a potential asnwer: C: How to run a set or batch of genome assemblies at once in one go?
Hello @genomax2, the link that you provided is more for multiple assemblies.
These samples are replicates but are expected to have slight variation. Should I proceed with the cat?
It would not be appropriate to
gzip/catdifferent samples into combined file(s). If the files in question are replicates of the same sample then it should be ok.