Entering edit mode
7.3 years ago
tans0307
•
0
Hello there,
I am trying to do an assembly with multiple samples using the spade software. The samples are paired-end reads and I will just like to get one scaffold from these samples. Will appreciate any feedback on how I can do so!
Thank You.
Reference link for a potential asnwer: C: How to run a set or batch of genome assemblies at once in one go?
Hello @genomax2, the link that you provided is more for multiple assemblies.
These samples are replicates but are expected to have slight variation. Should I proceed with the cat?
It would not be appropriate to
gzip/cat
different samples into combined file(s). If the files in question are replicates of the same sample then it should be ok.