I am searching for data set to build indels recalibration model for maize using GATK,
like
java -jar GenomeAnalysisTK.jar -T VariantRecalibrator -R reference.fa -input recalibrated_snps_raw_indels.vcf
-resource:mills,known=false,training=true,truth=true,prior=12.0 Mills_and_1000G_gold_standard.indels.b37.sites.vcf
in human they use Mills
Known and true sites training resource: Mills
searched in Panzea database the Maize HapMapV3.2.1 genotypes (with imputation by LinkImpute)
they did not say that data contains indels as they declared before in Maize HapMapV2 genotypes
High quality genotypes were obtained for 55 million SNPs and small indels
more info from Panzea
any suggestions?