genotype Varscan2 tumor/normal samples
Hello!
I have a question: I have data from tumor and control samples (exome sequencing). I have used Varscan2 in order to call variants but I didn't understand how it assigned the genotype of tumor and control samples.
Below I attach an image of a part of my vcf.
The genotypes that I didn't understand are highlighted in red:
- why the genotypes of normal sample in chr1 12887054 and 16776770 are 1/1?
- why the genotypes of tumor in chr1 32120616 and 36212199 are 1/1?
Thank you in advance. Best regards
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